SNP Profiles of ICS 48 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CT	TT	AA	CC	GT	CT	AT	AA	CT	AA	CT
1._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
2._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
3._RUQ_146	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
4._ICS_48	CT	AG	GG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
5._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
6._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
7._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
8._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
9._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
10._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
11._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
12._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
13._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
14._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
15._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
16._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
17._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
18._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
19._RUQ_146	_	_	CG	_	_	_	_	GT	_	_	AA	_	AA	_
20._RUQ_146	_	AG	CG	CT	_	_	_	GT	_	_	_	CT	AA	_
21._GC-05-078-2-29	TT	AA	GG	CT	TT	AA	CC	TT	CC	AA	AA	CC	AA	TT
22._ICS_48	TT	AA	GG	CT	TT	AA	CC	TT	CC	AA	AA	CC	AA	TT
23._RUQ_146	AG	AG	CC	AG	AA	AA	GG	AA	_	AA	AA	AG	AA	AG
24._ICS_48_Fld#_105_Plt#_2	AG	AG	CG	AG	AG	AC	AG	AC	_	AT	AG	GG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC	AG
1._GC-05-120-3-22	AA	GG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC	AG
2._ICS_48	AA	GG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC	AG
3._RUQ_146	AA	GG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC	AG
4._ICS_48	AA	CG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC	AG
5._ICS_48	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
6._GC-05-078-2-29	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
7._GC-05-078-2-29	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
8._GC-05-078-2-29	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
9._GC-05-078-2-29	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
10._GC-05-120-3-22	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
11._GC-05-120-3-22	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
12._ICS_48	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
13._ICS_48	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
14._ICS_48	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
15._ICS_48	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
16._ICS_48	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
17._ICS_48	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
18._GC-05-120-3-22	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC	AG
19._RUQ_146	_	_	_	_	CG	TT	AG	_	AC	CG	_	_	CC	_
20._RUQ_146	_	_	_	CC	CG	TT	_	CT	AA	GG	GT	CT	CC	AG
21._GC-05-078-2-29	AA	GG	TT	CC	GG	GT	GG	TT	CC	CG	TT	TT	CC	AA
22._ICS_48	AA	GG	TT	CC	GG	GT	GG	TT	CC	CG	TT	TT	CC	AA
23._RUQ_146	AA	GG	AA	GG	CG	AA	_	AG	AC	CG	AC	_	CC	_
24._ICS_48_Fld#_105_Plt#_2	AT	GG	AG	GG	CC	CC	_	AA	AC	CC	AC	_	AC	_

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
1._GC-05-120-3-22	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
2._ICS_48	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
3._RUQ_146	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
4._ICS_48	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
5._ICS_48	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
6._GC-05-078-2-29	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
7._GC-05-078-2-29	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
8._GC-05-078-2-29	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
9._GC-05-078-2-29	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
10._GC-05-120-3-22	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
11._GC-05-120-3-22	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
12._ICS_48	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
13._ICS_48	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
14._ICS_48	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
15._ICS_48	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
16._ICS_48	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
17._ICS_48	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
18._GC-05-120-3-22	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
19._RUQ_146	_	_	_	AG	_	_	_	AC	_	_	X_X	X_X	X_X	X_X
20._RUQ_146	_	AT	CT	AG	AC	CT	GT	AC	_	_	X_X	X_X	X_X	X_X
21._GC-05-078-2-29	GG	AA	CT	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
22._ICS_48	GG	AA	CT	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
23._RUQ_146	GG	AT	AG	AG	AC	AG	AC	AC	AT	GG	X_X	X_X	X_X	X_X
24._ICS_48_Fld#_105_Plt#_2	GG	AT	AG	AA	AC	AG	AC	CC	AT	GG	X_X	X_X	X_X	X_X

Input profile: ICS_48

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E318 T6

Dapeng Zhang, 2016

1._ICS_48 GC-05-120-3-22

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

2._ICS_48

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5322 3 > FP

Dapeng Zhang, 2016

3._ICS_48 RUQ_146

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._ICS_48

97.4 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

5._ICS_48

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 4

Dapeng Zhang, 2016

6._ICS_48 GC-05-078-2-29

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._ICS_48 GC-05-078-2-29

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._ICS_48 GC-05-078-2-29

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._ICS_48 GC-05-078-2-29

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._ICS_48 GC-05-120-3-22

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

11._ICS_48 GC-05-120-3-22

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

12._ICS_48

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._ICS_48

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 5

Dapeng Zhang, 2016

14._ICS_48

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 1 > FP

Dapeng Zhang, 2016

15._ICS_48

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 1

Dapeng Zhang, 2016

16._ICS_48

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 4

Dapeng Zhang, 2016

17._ICS_48

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 2 > FP

Dapeng Zhang, 2016

18._ICS_48 GC-05-120-3-22

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

19._ICS_48 RUQ_146

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

20._ICS_48 RUQ_146

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

21._ICS_48 GC-05-078-2-29

72.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

22._ICS_48

72.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 2 > FP

Dapeng Zhang, 2016

23._ICS_48 RUQ_146

51.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

24._ICS_48 ICS_48_Fld#_105_Plt#_2

41.2 %
34 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 105, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25